Robert Kofler, PhD

Solexa data analysis
Room 426.01
Phone internal 1226
Phone external ++34 933 160 226

Research interests

Plant genomics, comparative genomics, miRNA expression, next generation sequencing,
gene expression, SNP analysis, software design pattern, algorithm design


Kofler, R., Torres, T.T., Lelley, T. & Schlötterer, C. PanGEA: Identification of Allele Specific Gene Expression using the 454 technology. BMC Bioinformatics 10, 143. (2009)
Kofler, R., Schlötterer, C., Luschutzky, E. & Lelley, T. Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites. BMC Genomics. 9, 612. (2008).
Kofler, R. et al. Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1. Theor Appl Genet. 117, 915-26. Epub 2008 Jul 15. (2008).
Gong, L., Stift, G., Kofler, R., Pachner, M. & Lelley, T. Microsatellites for the genus Cucurbita and an SSR-based genetic linkage map of Cucurbita pepo L. Theor Appl Genet. 117, 37-48. Epub 2008 Apr 1. (2008).
Bartos, J., Paux, E., Kofler, R. et al. A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R. BMC Plant Biol. 8, 95. (2008).
Kofler, R., Schlötterer, C. & Lelley, T. SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics. 23, 1683-5. Epub 2007 Apr 26. (2007).

Personal interests

Music, literature, programing languages

 Ultrasequencing Unit
Centre for Genomic Regulation (CRG)
Barcelona, Spain