Publications since 2008

2012

  • Tsend-Ayush E., Kortschak R.D., Bernard P., Lim S.L., Ryan J., Rosenkranz R., Borodina T., Dohm J.C., Himmelbauer H., Harley V.R., Grützner F. (2012). Identification of mediator complex 26 (Crsp7) gametologs on platypus X1 and Y5 sex chromosomes: a candidate testis-determining gene in monotremes? Chromosome Res, in press.

  • Menzel G., Krebs C., Diez M., Holtgräwe D., Weisshaar B., Minoche A.E., Dohm J.C., Himmelbauer H., Schmidt T. (2012). Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Mol Biol, in press.

  • Montagut C., Dalmases A., Bellosillo B., Crespo M., Pairet S., Iglesias M., Salido M., Gallen M., Marsters S., Tsai S.P., Minoche A., Somasekar S., Serrano S., Bellmunt J., Himmelbauer H., Rovira A., Settleman J., Bosch F., Albanell J. (2012). Ectodomain mutation of the epidermal growth factor receptor conferring resistance to cetuximab in colorectal cancer. Nature Medicine, in press.

2011

  • Dohm J.C., Lange C., Holtgräwe D., Rosleff Sörensen T., Borchardt D., Schulz B., Lehrach H., Weisshaar B., Himmelbauer H. (2011). Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). Plant Journal, in press.

  • Quesada V., Conde L., Villamor N., Ordóñez G.R., Jares P., Bassaganyas L., Ramsay A.J., Beà S., Pinyol M., Martínez-Trillos A., López-Guerra M., Colomer D., Navarro A., Baumann T., Aymerich M., Rozman M., Delgado J., Giné E., Hernández J.M., González-Díaz M., Puente D.A., Velasco G., Freije J.M., Tubío J.M., Royo R., Gelpí J.L., Orozco M., Pisano D.G., Zamora J., Vázquez M., Valencia A., Himmelbauer H., Bayés M., Heath S., Gut M., Gut I., Estivill X., López-Guillermo A., Puente X.S., Campo E., López-Otín C. (2011). Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia. Nature Genetics 44:47-52.

  • Minoche A., Dohm J. C., Himmelbauer H. (2011). Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems. Genome Biology 12:R112.

  • Schulz N., Himmelbauer H., Rath M., van Weeghel M., Houten S., Suhre K., Scherneck S., Vogel H., Kluge R., Wiedmer P., Joost H.-G., Schürmann A. (2011). Role of medium and short-chain L-3-hydroxyacyl-CoA dehydrogenase in the regulation of body weight and thermogenesis. Endocrinology 152:4641-4651.

  • Dobbernack G., Meinl W., Schade N., Florian S., Wend K., Voigt I., Himmelbauer H., Gross M., Liehr T., Glatt H. R. (2011). Altered tissue distribution of 2-amino-1methyl-6-phenylimidazol[4,5-b]pyridine-DNA adducts in mice transgenic for human sulfotransferases 1A1 and 1A2. Carcinogenesis 32:1734-1740.

  • Llorens F., Hummel M., Pastor X., Ferrer A., Pluvinet R., Vivancos A., Castillo E., Iraola S., M Mosquera A. M., Gonzalez E., Lozano J., Ingham M., Dohm J.C., Noguera M., Kofler R., Del Rio J.A., Bayes M., Himmelbauer H., Lauro Sumoy L. (2011). Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis. BMC Genomics 12:326

  • Herrmann F., Garriga-Canut M., Baumstark R., Fajardo-Sanchez E., Cotterell J., Minoche A., Himmelbauer H., Isalan M. (2011). p53 Gene Repair with Zinc Finger Nucleases Optimised by Yeast 1-Hybrid and Validated by Solexa Sequencing. PLoS One 6:e20913.

  • Schroeder I.S., Sulzbacher S., Nolden T., Fuchs J., Czarnota J., Meisterfeld R., Himmelbauer H., Wobus A.M. (2011). Induction and selection of Sox17 expressing endoderm cells generated from murine embryonic stem cells. Cells Tissues Organs, in press.

  • Puente X.S., Pinyol M., Quesada V., Conde L., Ordóñez G.R., Villamor N., Escaramis G., Jares P., Beà S., González-Díaz M., Bassaganyas L., Baumann T., Juan M., López-Guerra M., Colomer D., Tubío J.M., López C., Navarro A., Tornador C., Aymerich M., Rozman M., Hernández J.M., Puente D.A., Freije J.M., Velasco G., Gutiérrez-Fernández A., Costa D., Carrió A., Guijarro S., Enjuanes A., Hernández L., Yagüe J., Nicolás P., Romeo-Casabona C.M., Himmelbauer H., Castillo E., Dohm J.C., de Sanjosé S., Piris M.A., de Alava E., Miguel J.S., Royo R., Gelpí J.L., Torrents D., Orozco M., Pisano D.G., Valencia A., Guigó R., Bayés M., Heath S., Gut M., Klatt P., Marshall J., Raine K., Stebbings L.A., Futreal P.A., Stratton M.R., Campbell P.J., Gut I., López-Guillermo A., Estivill X., Montserrat E., López-Otín C., Campo E. (2011). Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia. Nature 475, 101-105.

  • Zakrzewski F., Weisshaar B., Fuchs J., Bannack E., Minoche A.E., Dohm J.C., Himmelbauer H., Schmidt T. (2011). Epigenetic profiling of heterochromatic satellite DNA. Chromosoma 120, 409-422.

  • Esteve A., Kofler R., Himmelbauer H., Ferretti L., Vivancos A. P., Groenen M. A. M., Folch J. M., Rodríguez M. C., Pérez-Enciso M. (2011). Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof. Heredity 107, 256-264.

  • Meunier D., Patra K., Smits R., Hägebarth A., Lüttges A., Jaussi R., Wieduwilt M.J., Quintanilla-Fend L., Himmelbauer H., Fodde R., Fundele R. (2011). Expression analysis of Proline Rich 15 ( Prr15) in mouse and human gstrointestinal tumours. Molecular Carcinogenesis 50, 8-15.

2010

  • Vivancos A.P., Güell M., Dohm J. C., Serrano L., Himmelbauer H. (2010). Strand-specific sequencing of the transcriptome. Genome Research 20, 989-999.

  • The International Cancer Genome Consortium. (2010). International network of cancer genome projects. Nature 464, 993-998.

  • Lange C., Mittermayr L., Dohm J. C., Holtgräwe D., Weisshaar B., Himmelbauer H. (2010). High-throughput identification of genetic markers using representational oligonucleotide microarray analysis. Theoretical and Applied Genetics 121, 549-565.

  • Doss M. X., Wagh V., Schulz H., Kull M., Kolde R., Pfannkuche K., Nolden T., Himmelbauer H., Vilo J., Hescheler H., Sachinidis S. (2010). Global transcriptomic analysis of murine embryonic stem cell-derived brachyury (T) cells. Genes to Cells 15, 209-228.

2009

  • Mertes F., Martinez-Morales J. R., Nolden T., Spörle R., Wittbrodt J., Lehrach H., Himmelbauer H. (2009). Cloning of mouse ojoplano, a reticular cytoplasmic protein expressed during embryonic development. Gene Expr Patterns 9, 562-567.

  • Schulz H., Kolde R., Adler P., Aksoy I., Anastassiadis K., Bader M., Billon N., Boeuf H., Bourillot P.-Y., Buchholz F., Dani C., Xavier Doss M.X., M Forrester L., Gitton M., Henrique D., Hescheler J., Himmelbauer H., Hübner N., Karantzali E., Kretsovali A., Lubitz S., Pradier L., Reimand J., Rolletschek A., Sachinidis A., Savatier P., Stewart F., Storm M.P., Trouillas M., Vilo V., Welham M., Winkler J., Wobus A. M., Hatzopolous A.K. (2009). The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation. PLoS ONE 4, e6804.

  • Martinez-Morales M. J., Rembold M., Greger K., Simpson J. C., Brown K. E., Quiring R., Pepperkok R., Martin-Bermudo M. D., Himmelbauer H., Wittbrodt J. (2009). ojoplano-mediated basal constriction is essential for optic cup morphogenesis. Development 136, 2165-2175.

  • Dohm J. C., Lange C., Reinhardt R., Himmelbauer H. (2009). Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes. Plant Journal 57, 14-26.

  • Tsend-Ayush A., Dodge N., Mohr J., Casey A., Himmelbauer H., Kremitzki C.L., Schatzkammer K., Graves T., Warren W., Grützner F. (2009). Higher-order genome organization in platypus and chicken sperm and repositioning of sex chromosomes during mammalian evolution. Chromosoma 118, 53-69.

2008

  • Lange C., Holtgräwe D., Schulz B., Weisshaar B., Himmelbauer H. (2008). Construction and characterization of a sugar beet (Beta vulgaris) fosmid library. Genome 51, 948-951.

  • Weichenhan D., Traut W., Göngrich C., Himmelbauer H., Busch L., Monyer H., Winking H. (2008). A mouse translocation associated with Caspr5-2 disruption and perinatel lethality. Mamm. Genome 19, 675-686.

  • Schmidt S., Richer M., Montag D., Sartorius T., Gawlik V., Hennige A.M., Scherneck S., Himmelbauer H., Lutz S. Z., Augustin R., Kluge R., Ruth P., Joost H. G., Schürmann A. (2008). Neuronal functions, feeding behavior, and energy balance in Slc2a3+/- mice. Am J Physiol Endocrinol Metab. 295, E1084-1094.

  • Iwanami N., Higuchi T., Sasano Y., Fujiwara T., Hoa V.Q., Okada M., Talukder S.R., Kunimatsu S., Li J., Saito F., Bhattacharya C., Matin A., Sasaki T., Shimizu N., Mitani H., Himmelbauer H., Momoi A., Kondoh H., Furutani-Seiki M., Takahama Y. (2008). WDR is a nucleolar modulator of ribosomal RNA synthesis, cell cycle progression, and teleost organ development. PLOS Genetics 4, e1000171.

  • Dohm J. C., Lottaz C., Borodina T., Himmelbauer H. (2008). Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 36, e105.

  • Mao L., Hartl D., Nolden T., Koppelstätter A., Klose J., Himmelbauer H., Zabel C. (2008). Pronounced alterations of cellular metabolism and structure due to hyper- or hypo-osmosis. J. Proteome Res. 9, 3968-3683.

  • Rosenkranz R., Borodina T., Lehrach H., Himmelbauer H. (2008). Characterizing the mouse ES cell transcriptome with Illumina sequencing. Genomics 92, 187-194.

 
 Ultrasequencing Unit
Centre for Genomic Regulation (CRG)
Barcelona, Spain